Beth Sheets
Product Manager for Scientific Services
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Activity overview
Latest activity by Beth Sheets-
Beth Sheets created an article,
Impute your samples with our new point-and-click interface
We are excited to announce that you can now submit and monitor imputation service jobs with an easy point-and-click interface. To get started, go to https://services.terra.bio/ and sign in with you...
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Beth Sheets created an article,
How to cite the service
Array Imputation Service Please cite the service using the following format: Data Science Services at Broad Clinical Laboratories. (date of access: Year, Month Day). Pipeline name (version). https...
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Beth Sheets created an article,
Introducing the All of Us + AnVIL Imputation Service
The Broad Institute’s Data Sciences Platform has launched the All of Us + AnVIL Imputation Service, now available at https://allofus-anvil-imputation.terra.bio/. This is the first in a new suite of...
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Beth Sheets created an article,
About the reference panel
The All of Us + AnVIL reference panel is the largest and most ancestrally diverse reference panel currently available, providing a valuable asset to researchers to make new discoveries and enhance ...
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Beth Sheets created an article,
Quota
During the Beta release of the service, each user is granted a quota of 2500 samples for array imputation at no cost, thanks to funding from the NIH. This quota may change in the future. After the ...
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Beth Sheets created an article,
Overview of the Imputation Service
The imputation service is available through both a web-based user interface (UI) and command-line interface (CLI). Both accept data from your local compute environment. When you upload your data an...
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Beth Sheets created an article,
Imputation Service FAQs
Jump to:GeneralArray Imputation GeneralCan I run the service locally without my data leaving my system?No, this service is cloud-based and your data must be able to be uploaded to our secure servic...
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Beth Sheets created an article,
Troubleshooting
If a job you’ve submitted fails, you’ll get an email notification with some details about the type of error encountered. Below are some common error scenarios and guidance on how to deal with them....
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Beth Sheets created an article,
Using the Command Line Interface
Jump to:Step 1 - Prerequisites and setupStep 2 - Submit a jobStep 3 - Wait (and monitor)Step 4 - Retrieve OutputStep 5 (optional) - Log out Step 1 - Prerequisites and setupTo use the imputation ser...
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Beth Sheets created an article,
Create an Account
The imputation service uses Terra behind the scenes, which is a FedRAMP Moderate environment and approved by the NIH for use with controlled-access data. Learn more about Terra’s security.If you do...